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transform: coerce empty strings to NULL when converting TEXT columns to numeric types (#805)
* transform: coerce empty strings to NULL when converting TEXT columns to numeric types When a TEXT column is transformed to INTEGER, FLOAT, or REAL and a row contains an empty string, the empty string is now converted to NULL during the INSERT...SELECT copy, matching the expected behavior described in #488. Fixes #488
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5 changed files with 57 additions and 5 deletions
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@ -25,6 +25,7 @@ Unreleased
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- ``sqlite-utils convert --dry-run`` now works for table and column names containing closing square brackets. (:issue:`829`)
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- ``table.indexes`` and ``table.xindexes`` now work for table, index and column names containing double quotes. This also fixes ``table.transform()`` for tables with those identifiers. Thanks, `nyxst4ck <https://github.com/nyxst4ck>`__. (:issue:`824`, `#825 <https://github.com/simonw/sqlite-utils/pull/825>`__)
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- Improved type annotations throughout the package and added Pyright regression checks to CI. (:issue:`833`)
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- Changing a ``TEXT`` column to ``INTEGER``, ``FLOAT`` or ``REAL`` using ``table.transform()`` or ``sqlite-utils transform`` now converts exact empty strings to ``NULL``. Previously they remained empty strings in the numeric column. Thanks, `ikatyal2110 <https://github.com/ikatyal2110>`__. (:issue:`488`, `#805 <https://github.com/simonw/sqlite-utils/pull/805>`__)
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.. _v3_39_1:
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@ -2236,7 +2236,7 @@ The ``transform`` command allows you to apply complex transformations to a table
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Every option for this table (with the exception of ``--pk-none``) can be specified multiple times. The options are as follows:
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``--type column-name new-type``
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Change the type of the specified column. Valid types are ``integer``, ``text``, ``float``, ``real``, ``blob`` and ``any``.
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Change the type of the specified column. Valid types are ``integer``, ``text``, ``float``, ``real``, ``blob`` and ``any``. Changing a ``TEXT`` column to ``INTEGER``, ``FLOAT`` or ``REAL`` converts exact empty-string values to ``NULL``.
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``--drop column-name``
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Drop the specified column.
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@ -1826,6 +1826,8 @@ To alter the type of a column, use the ``types=`` argument:
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# Convert the 'age' column to an integer, and 'weight' to a float
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table.transform(types={"age": int, "weight": float})
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When a ``TEXT`` column is changed to ``INTEGER``, ``FLOAT`` or ``REAL``, exact empty-string values are stored as ``NULL``. Other values, including whitespace-only strings, are copied normally.
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See :ref:`python_api_add_column` for a list of available types.
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.. _python_api_transform_strict:
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@ -3093,6 +3093,19 @@ class Table(Queryable):
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).strip()
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)
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# Columns being changed from TEXT to a numeric type: coerce empty strings to NULL
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_numeric_sql_types = {"INTEGER", "REAL", "FLOAT", "NUMERIC"}
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text_to_numeric_cols = {
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col_name
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for col_name, new_type in types.items()
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if existing_columns.get(col_name) == str
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and COLUMN_TYPE_MAPPING.get(
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new_type,
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new_type.upper() if isinstance(new_type, str) else "",
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)
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in _numeric_sql_types
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}
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# Copy across data, respecting any renamed columns
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new_cols = []
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old_cols = []
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@ -3103,10 +3116,16 @@ class Table(Queryable):
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if "rowid" not in new_cols:
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new_cols.insert(0, "rowid")
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old_cols.insert(0, "rowid")
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def _copy_expr(col):
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if col in text_to_numeric_cols:
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return "NULLIF({}, '')".format(quote_identifier(col))
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return quote_identifier(col)
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copy_sql = "INSERT INTO {} ({new_cols})\n SELECT {old_cols} FROM {};".format(
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quote_identifier(new_table_name),
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quote_identifier(self.name),
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old_cols=", ".join(quote_identifier(col) for col in old_cols),
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old_cols=", ".join(_copy_expr(col) for col in old_cols),
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new_cols=", ".join(quote_identifier(col) for col in new_cols),
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)
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sqls.append(copy_sql)
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@ -27,7 +27,7 @@ from sqlite_utils.utils import OperationalError
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{"types": {"age": int}},
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[
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'CREATE TABLE "dogs_new_suffix" (\n "id" INTEGER PRIMARY KEY,\n "name" TEXT,\n "age" INTEGER\n);',
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'INSERT INTO "dogs_new_suffix" ("rowid", "id", "name", "age")\n SELECT "rowid", "id", "name", "age" FROM "dogs";',
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'INSERT INTO "dogs_new_suffix" ("rowid", "id", "name", "age")\n SELECT "rowid", "id", "name", NULLIF("age", \'\') FROM "dogs";',
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'DROP TABLE "dogs";',
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"PRAGMA legacy_alter_table=ON;",
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'ALTER TABLE "dogs_new_suffix" RENAME TO "dogs";',
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@ -63,7 +63,7 @@ from sqlite_utils.utils import OperationalError
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{"types": {"age": int}, "rename": {"age": "dog_age"}},
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[
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'CREATE TABLE "dogs_new_suffix" (\n "id" INTEGER PRIMARY KEY,\n "name" TEXT,\n "dog_age" INTEGER\n);',
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'INSERT INTO "dogs_new_suffix" ("rowid", "id", "name", "dog_age")\n SELECT "rowid", "id", "name", "age" FROM "dogs";',
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'INSERT INTO "dogs_new_suffix" ("rowid", "id", "name", "dog_age")\n SELECT "rowid", "id", "name", NULLIF("age", \'\') FROM "dogs";',
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'DROP TABLE "dogs";',
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"PRAGMA legacy_alter_table=ON;",
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'ALTER TABLE "dogs_new_suffix" RENAME TO "dogs";',
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@ -168,7 +168,7 @@ def test_transform_sql_table_with_primary_key(
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{"types": {"age": int}},
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[
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'CREATE TABLE "dogs_new_suffix" (\n "id" INTEGER,\n "name" TEXT,\n "age" INTEGER\n);',
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'INSERT INTO "dogs_new_suffix" ("rowid", "id", "name", "age")\n SELECT "rowid", "id", "name", "age" FROM "dogs";',
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'INSERT INTO "dogs_new_suffix" ("rowid", "id", "name", "age")\n SELECT "rowid", "id", "name", NULLIF("age", \'\') FROM "dogs";',
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'DROP TABLE "dogs";',
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"PRAGMA legacy_alter_table=ON;",
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'ALTER TABLE "dogs_new_suffix" RENAME TO "dogs";',
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@ -1125,6 +1125,36 @@ def test_transform_preserves_autoincrement_and_sequence(fresh_db):
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]
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@pytest.mark.parametrize(
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"new_type,expected_value,expected_type",
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[
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(int, 42, int),
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(float, 42.0, float),
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("integer", 42, int),
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("float", 42.0, float),
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("REAL", 42.0, float),
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],
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)
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def test_transform_empty_string_to_null_for_numeric_types(
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fresh_db, new_type, expected_value, expected_type
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):
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fresh_db["test"].insert_all(
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[
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{"id": 1, "value": "42"},
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{"id": 2, "value": ""},
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{"id": 3, "value": None},
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{"id": 4, "value": " "},
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]
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)
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fresh_db["test"].transform(types={"value": new_type})
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rows = {r["id"]: r["value"] for r in fresh_db["test"].rows}
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assert rows[1] == expected_value
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assert type(rows[1]) is expected_type
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assert rows[2] is None
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assert rows[3] is None
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assert rows[4] == " "
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def test_transform_preserves_view(fresh_db):
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# https://github.com/simonw/sqlite-utils/issues/831
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dogs = fresh_db.table("dogs")
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